A discrete stochastic formulation for reversible bimolecular reactions via diffusion encounter

DOI10.4310/CMS.2016.V14.N6.A13zbMath1352.92070arXiv1511.08798MaRDI QIDQ344396

Mauricio J. Del Razo, Hong Qian

Publication date: 22 November 2016

Published in: Communications in Mathematical Sciences (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1511.08798

zbMATH Keywords

Brownian motionMarkov chainchemical kineticsabsorption boundaryback-reaction boundarydiscrete stochastic reaction-diffusion model

Mathematics Subject Classification ID

Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Biochemistry, molecular biology (92C40) Applications of Brownian motions and diffusion theory (population genetics, absorption problems, etc.) (60J70) Boundary theory for Markov processes (60J50) Stochastic particle methods (65C35)

Related Items (4)

Chemical diffusion master equation: Formulations of reaction–diffusion processes on the molecular level ⋮ A probabilistic framework for particle-based reaction-diffusion dynamics using classical Fock space representations ⋮ Reversible Doi and Smoluchowski Kinetics for High-Order Reactions ⋮ Coupling Particle-Based Reaction-Diffusion Simulations with Reservoirs Mediated by Reaction-Diffusion PDEs

Uses Software

• E-CELL
• URDME
• ReaDDy
• STEPS
• MesoRD

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