Deprecated: $wgMWOAuthSharedUserIDs=false is deprecated, set $wgMWOAuthSharedUserIDs=true, $wgMWOAuthSharedUserSource='local' instead [Called from MediaWiki\HookContainer\HookContainer::run in /var/www/html/w/includes/HookContainer/HookContainer.php at line 135] in /var/www/html/w/includes/Debug/MWDebug.php on line 372
Indexing compressed text - MaRDI portal

Indexing compressed text

From MaRDI portal
Publication:3546296

DOI10.1145/1082036.1082039zbMath1323.68261OpenAlexW2159647614WikidataQ124796874 ScholiaQ124796874MaRDI QIDQ3546296

Giovanni Manzini, Paolo Ferragina

Publication date: 21 December 2008

Published in: Journal of the ACM (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1145/1082036.1082039




Related Items

Arithmetics on Suffix Arrays of Fibonacci WordsBidirectional Variable-Order de Bruijn GraphsThe Burrows-Wheeler Transform between Data Compression and Combinatorics on WordsKings, Name Days, Lazy Servants and MagicA new class of string transformations for compressed text indexingPractical Wavelet Tree ConstructionEngineering Practical Lempel-Ziv TriesString Indexing with Compressed PatternsComputational graph pangenomics: a tutorial on data structures and their applicationsUnnamed ItemConstructing and indexing the bijective and extended Burrows-Wheeler transformUnnamed ItemGraphs cannot be indexed in polynomial time for sub-quadratic time string matching, unless SETH failsFull-Text Indexes for High-Throughput SequencingCUSHAW Suite: Parallel and Efficient Algorithms for NGS Read AlignmentLZ78 Compression in Low Main Memory SpaceForty Years of Text IndexingUnnamed ItemUnnamed ItemOn the Hardness and Inapproximability of Recognizing Wheeler GraphsA Succinct Solution to Rmap AlignmentA new class of searchable and provably highly compressible string transformationsIndexing the bijective BWTPrefix-Free Parsing for Building Big BWTsHaplotype-aware graph indexesAnalysis of Min-Hashing for Variant Tolerant DNA Read MappingStructural Pattern Matching - Succinctly.Lazy Lempel-Ziv Factorization AlgorithmsFast Compressed Self-Indexes with Deterministic Linear-Time ConstructionOn Undetected Redundancy in the Burrows-Wheeler TransformPractical Compact Indexes for Top-kDocument RetrievalThe Heaviest Induced Ancestors Problem RevisitedOnline LZ77 Parsing and Matching Statistics with RLBWTsExtended suffix array construction using Lyndon factorsCompressed string dictionary search with edit distance oneAn external-memory algorithm for string graph constructionEngineering a lightweight external memory suffix array construction algorithmCompressed spaced suffix arraysGraphs cannot be indexed in polynomial time for sub-quadratic time string matching, unless SETH failsFM-index of alignment: a compressed index for similar stringsApproximate search of short patterns with high error rates using the \(01^\ast 0\) lossless seedsLyndon array construction during Burrows-Wheeler inversionOn position restricted substring searching in succinct spaceUnnamed ItemSelf-indexed Text Compression Using Straight-Line ProgramsThe heaviest induced ancestors problem: better data structures and applicationsSpace-Efficient Frameworks for Top- k String RetrievalGrammar compressed sequences with rank/select supportLogarithmic equal-letter runs for BWT of purely morphic wordsApproximate string matching with compressed indexesGrammar-compressed indexes with logarithmic search timeA simple storage scheme for strings achieving entropy boundsCompressed directed acyclic word graph with application in local alignmentWheeler graphs: a framework for BWT-based data structuresSpace-time trade-offs for finding shortest unique substrings and maximal unique matchesComposite Repetition-Aware Data StructuresSuccinct Non-overlapping IndexingDictionary Matching with Uneven GapsCompressed property suffix treesA framework for space-efficient string kernelsLossless Seeds for Searching Short Patterns with High Error RatesOn compressing and indexing repetitive sequencesLightweight algorithms for constructing and inverting the BWT of string collectionsFaster repetition-aware compressed suffix trees based on block treesEdge minimization in de Bruijn graphsMulti-pattern matching with bidirectional indexesAlgorithms to compute the Burrows-Wheeler similarity distributionString search experimentation using massive dataHybrid indexes for repetitive datasetsIndexing a sequence for mapping reads with a single mismatchImproved characters distance sampling for online and offline text searchingEncoding 2D range maximum queriesUltra-succinct representation of ordered trees with applicationsTime-space trade-offs for Lempel-Ziv compressed indexingApproximate all-pairs suffix/prefix overlapsNew algorithms on wavelet trees and applications to information retrievalStronger Lempel-Ziv based compressed text indexingFM-index of alignment with gapsCompressed text indexing with wildcardsEfficient online string matching based on characters distance text samplingParallel algorithms for Burrows-Wheeler compression and decompressionDictionary matching with a bounded gap in pattern or in textWavelet trees for allFast relative Lempel-Ziv self-index for similar sequencesSuccinct data structures for flexible text retrieval systemsA framework for designing space-efficient dictionaries for parameterized and order-preserving matchingEfficient fully-compressed sequence representationsOptimal indexes for sparse bit vectorsUniversal compressed text indexingAlphabet-independent linear-time construction of compressed suffix arrays using \(o(n \log n)\)-bit working spaceImproved space-time tradeoffs for approximate full-text indexing with one edit errorFixed block compression boosting in FM-indexes: theory and practiceAlgorithms for Indexing Highly Similar DNA SequencesA simpler analysis of Burrows-Wheeler-based compressionFast BWT in small space by blockwise suffix sortingFaster suffix sortingRank and select revisited and extendedFast compressed self-indexes with deterministic linear-time constructionSelf-indexing Based on LZ77Lightweight BWT Construction for Very Large String CollectionsA grouping approach for succinct dynamic dictionary matchingDynamic relative compression, dynamic partial sums, and substring concatenationComputing the multi-string BWT and LCP array in external memoryA quick tour on suffix arrays and compressed suffix arraysSpace-efficient construction of Lempel-Ziv compressed text indexesFlexible indexing of repetitive collectionsDistribution-aware compressed full-text indexesCompressed string-matching in standard Sturmian wordsLempel-Ziv compressed structures for document retrievalSuccinct data structures for searchable partial sums with optimal worst-case performanceRanked document retrieval for multiple patternsWee LCPLempel-Ziv factorization powered by space efficient suffix treesSuccinct non-overlapping indexingA resource-frugal probabilistic dictionary and applications in bioinformaticsA brief history of parameterized matching problemsRefining the \(r\)-indexParallel computation of the Burrows Wheeler transform in compact spaceLightweight merging of compressed indices based on BWT variantsThe alternating BWT: an algorithmic perspectiveWheeler languagesLocally Compressed Suffix ArraysGeneral Document Retrieval in Compact SpaceOrthogonal Range Searching for Text IndexingIndexes for Document Retrieval with RelevanceComputing the Burrows-Wheeler transform in place and in small spaceImproved and extended locating functionality on compressed suffix arraysGeometric BWT: compressed text indexing via sparse suffixes and range searchingLinked dynamic tries with applications to LZ-compression in sublinear time and spaceCompressing dictionary matching index via sparsification techniqueSpace-efficient substring occurrence estimationSpace efficient merging of de Bruijn graphs and Wheeler graphsOn the complexity of recognizing Wheeler graphs