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Approximate All-Pairs Suffix/Prefix Overlaps

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Publication:3575238
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DOI10.1007/978-3-642-13509-5_8zbMath1286.68535OpenAlexW1582906780MaRDI QIDQ3575238

Veli Mäkinen, Niko Välimäki, Susana Ladra

Publication date: 26 July 2010

Published in: Combinatorial Pattern Matching (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-642-13509-5_8



Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Algorithms on strings (68W32)


Related Items (6)

Fast and Simple Computations Using Prefix Tables Under Hamming and Edit Distance ⋮ Approximate all-pairs suffix/prefix overlaps ⋮ Computational graph pangenomics: a tutorial on data structures and their applications ⋮ Computing the Burrows-Wheeler transform of a string and its reverse in parallel ⋮ Linear-time computation of prefix table for weighted strings {\&} applications ⋮ Computing the multi-string BWT and LCP array in external memory







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