Molecular Embedding via a Second Order Dissimilarity Parameterized Approach

DOI10.1137/070688547zbMath1193.92039OpenAlexW2079628411WikidataQ61785922 ScholiaQ61785922MaRDI QIDQ3581065

Ian Grooms, Robert Michael Lewis, Michael W. Trosset

Publication date: 16 August 2010

Published in: SIAM Journal on Scientific Computing (Search for Journal in Brave)

Full work available at URL: https://semanticscholar.org/paper/59bf2107252edfdac05105adf5129ea77e1037eb

zbMATH Keywords

distance geometrymolecular conformationEuclidean distance matricesspectral functionsprotein foldinggraph embeddingrank constraintsmolecular embedding

Mathematics Subject Classification ID

Numerical mathematical programming methods (65K05) Applications of mathematical programming (90C90) Biochemistry, molecular biology (92C40) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)

Related Items

Euclidean distance matrix completion problems, Conditional quadratic semidefinite programming: examples and methods, Euclidean Distance Matrices and Applications, Euclidean Distance Matrix Completion and Point Configurations from the Minimal Spanning Tree

Uses Software

• ARPACK