Macroscopic Dynamics of Complex Metastable Systems: Theory, Algorithms, and Application to B-DNA

DOI10.1137/050630064zbMath1160.92022OpenAlexW2010625700MaRDI QIDQ3624458

Philipp Metzner, Christof Schütte, Evelyn Dittmer, Illia Horenko, Filip Lankas, John H. Maddocks

Publication date: 30 April 2009

Published in: SIAM Journal on Applied Dynamical Systems (Search for Journal in Brave)

Full work available at URL: https://semanticscholar.org/paper/08dabab30d92d53b59a5c6ef9035bbad67819030

zbMATH Keywords

hidden Markov modelstochastic differential equationsfree energymolecular dynamicsmetastable statesmaximum likelihood principlebiomolecular conformationsinter base pair parameters

Mathematics Subject Classification ID

Markov chains (discrete-time Markov processes on discrete state spaces) (60J10) Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Biochemistry, molecular biology (92C40)

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