Coarse grained normal mode analysis vs. refined Gaussian network model for protein residue-level structural fluctuations

DOI10.1007/s11538-012-9797-yzbMath1402.92330OpenAlexW2014204432WikidataQ42696210 ScholiaQ42696210MaRDI QIDQ371956

Mohammad Hasan, H. S. Yoon

Publication date: 11 October 2013

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc4373625

zbMATH Keywords

normal mode analysisatomic B-factorsatomic mean-square-fluctuationsGaussian network modelprotein structural fluctuationresidue mean-square-fluctuations

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Systems biology, networks (92C42)

Related Items (3)

Atom-specific persistent homology and its application to protein flexibility analysis ⋮ Molecular nonlinear dynamics and protein thermal uncertainty quantification ⋮ Evolutionary homology on coupled dynamical systems with applications to protein flexibility analysis

Uses Software

• CHARMM

Cites Work

• Molecular modeling and simulation. An interdisciplinary guide
• Introduction to Classical Mechanics

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