Topological classification and enumeration of RNA structures by genus

DOI10.1007/s00285-012-0594-xzbMath1335.92068OpenAlexW2029235587WikidataQ44396933 ScholiaQ44396933MaRDI QIDQ378306

Christian M. Reidys, Jørgen Ellegaard Andersen, Michael S. Waterman, Robert C. Penner

Publication date: 11 November 2013

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s00285-012-0594-x

zbMATH Keywords

generating functiongenusneutral networkPenner-Strebel decompositionRNA structuretopological surface

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Related Items (16)

Statistics of topological RNA structures ⋮ Topological recursion for Gaussian means and cohomological field theories ⋮ Regular simple queues of protein contact maps ⋮ Topological language for RNA ⋮ On a uniformly random chord diagram and its intersection graph ⋮ Models of discretized moduli spaces, cohomological field theories, and Gaussian means ⋮ Shapes of topological RNA structures ⋮ Generation of RNA pseudoknot structures with topological genus filtration ⋮ Enumeration of 4-regular one-face maps ⋮ Loop homology of bi-secondary structures ⋮ Moduli spaces and macromolecules ⋮ Plane Permutations and Applications to a Result of Zagier--Stanley and Distances of Permutations ⋮ The block spectrum of RNA pseudoknot structures ⋮ Loop homology of bi-secondary structures. II ⋮ Genus Ranges of Chord Diagrams ⋮ On RNA-RNA interaction structures of fixed topological genus

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