Coverage theories for metagenomic DNA sequencing based on a generalization of Stevens' theorem

DOI10.1007/s00285-012-0586-xzbMath1275.05007OpenAlexW2077322651WikidataQ34298942 ScholiaQ34298942MaRDI QIDQ378317

Karthik Kota, George M. Weinstock, Makedonka Mitreva, Michael C. Wendl

Publication date: 11 November 2013

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s00285-012-0586-x

zbMATH Keywords

coverageDNA sequencingmetagenomicsmicrobiome

Mathematics Subject Classification ID

Optimal statistical designs (62K05) Geometric probability and stochastic geometry (60D05) Factorials, binomial coefficients, combinatorial functions (05A10) Mathematical biology in general (92B99)

Uses Software

• Velvet
• BWA

Cites Work

• Occupancy modeling of coverage distribution for whole genome shotgun DNA sequencing
• Random Covering of Multiple One-Dimensional Domains with an Application to DNA Sequencing
• SOLUTION TO A GEOMETRICAL PROBLEM IN PROBABILITY
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