An algorithm for mapping short reads to a dynamically changing genomic sequence

DOI10.1016/j.jda.2011.08.006zbMath1236.92022OpenAlexW2096375120MaRDI QIDQ414417

Corne de Ridder, Costas S. Iliopoulos, Themba K. Musombuka, Laurent Mouchard, Solon P. Pissis, Derrick G. Kourie

Publication date: 11 May 2012

Published in: Journal of Discrete Algorithms (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jda.2011.08.006

zbMATH Keywords

mappingstring algorithmsnext-generation sequencing

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10) Data structures (68P05) Computational methods for problems pertaining to biology (92-08) Algorithms on strings (68W32)

Uses Software

• Soap
• BWA

Cites Work

• Algorithms on Strings, Trees and Sequences

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