Optimizing restriction site placement for synthetic genomes

DOI10.1016/J.IC.2012.02.003zbMath1237.92024OpenAlexW2015796689MaRDI QIDQ418177

Joseph S. B. Mitchell, Heraldo Memelli, Charles B. Ward, Pablo Montes, Joondong Kim, Steven S. Skiena

Publication date: 24 May 2012

Published in: Information and Computation (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.ic.2012.02.003

zbMATH Keywords

synthetic biologygenome refactoringrestriction enzyme placement

Mathematics Subject Classification ID

Dynamic programming (90C39) Biochemistry, molecular biology (92C40) Complexity and performance of numerical algorithms (65Y20)

Uses Software

• Nebcutter
• Genejax
• Sitefind

Cites Work

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• Efficient string matching
• An $n^{5/2} $ Algorithm for Maximum Matchings in Bipartite Graphs

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