Constructing circular phylogenetic networks from weighted quartets using simulated annealing

DOI10.1016/j.mbs.2011.11.003zbMath1237.92046OpenAlexW2007302687WikidataQ45900985 ScholiaQ45900985MaRDI QIDQ423083

Mehdi Sadeghi, Changiz Eslahchi, Mahnaz Habibi, Reza Hassanzadeh, Hamid Pezeshk, Ehsan Mottaghi

Publication date: 18 May 2012

Published in: Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.mbs.2011.11.003

zbMATH Keywords

circular orderingsupernetworks

Mathematics Subject Classification ID

Problems related to evolution (92D15) Mathematical programming (90C99) Systems biology, networks (92C42)

Uses Software

• Matlab
• Spectronet
• QNet

Cites Work

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• Optimization by Simulated Annealing
• Unique reconstruction of tree-like phylogenetic networks from distances between leaves
• Cyclic permutations and evolutionary trees
• Equation of State Calculations by Fast Computing Machines

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