The probability distribution of ranked gene trees on a species tree

DOI10.1016/j.mbs.2011.10.006zbMath1241.92055OpenAlexW1993168296WikidataQ51500447 ScholiaQ51500447MaRDI QIDQ433674

Noah A. Rosenberg, Tanja Stadler, James H. Degnan

Publication date: 5 July 2012

Published in: Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.mbs.2011.10.006

zbMATH Keywords

population geneticscoalescentphylogeneticsanomalous gene treesgenealogies

Mathematics Subject Classification ID

Trees (05C05) Problems related to evolution (92D15) Applications of graph theory (05C90) Random graphs (graph-theoretic aspects) (05C80) Probabilistic models, generic numerical methods in probability and statistics (65C20)

Related Items (8)

Enumeration of lonely pairs of gene trees and species trees by means of antipodal cherries ⋮ A lattice structure for ancestral configurations arising from the relationship between gene trees and species trees ⋮ Enumeration of compact coalescent histories for matching gene trees and species trees ⋮ Roadblocked monotonic paths and the enumeration of coalescent histories for non-matching caterpillar gene trees and species trees ⋮ Computing the probability of gene trees concordant with the species tree in the multispecies coalescent ⋮ On the unranked topology of maximally probable ranked gene tree topologies ⋮ Effects of discordance between species and gene trees on phylogenetic diversity conservation ⋮ The distributions under two species-tree models of the number of root ancestral configurations for matching gene trees and species trees

Uses Software

• BUCKy

Cites Work

• Unnamed Item
• Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: a model
• Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent
• Line-of-descent and genealogical processes, and their applications in population genetics models
• The probability of topological concordance of gene trees and species trees.
• Coalescent histories for discordant gene trees and species trees
• Maximum tree: a consistent estimator of the species tree
• Enumeration via ballot numbers

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