A Measure of DNA Sequence Dissimilarity Based on Mahalanobis Distance between Frequencies of Words
From MaRDI portal
Publication:4381036
DOI10.2307/2533509zbMath0931.62100OpenAlexW1973243276WikidataQ52251335 ScholiaQ52251335MaRDI QIDQ4381036
Daniel B. Davison, John P. Burke, Tiee-Jian Wu
Publication date: 18 March 1998
Published in: Biometrics (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.2307/2533509
Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)
Related Items (20)
Sequence similarity measures based on bounded Hamming distance ⋮ What's so special about Euclidean distance? A characterization with applications to mobility and spatial voting ⋮ Linear regression model of short \(k\)-word: a similarity distance suitable for biological sequences with various lengths ⋮ Prediction of high-risk types of human papillomaviruses using statistical model of protein ``sequence space ⋮ Spectral distortion measures for biological sequence comparisons and database searching ⋮ A linguistic approach to classification of bacterial genomes ⋮ Extraction of high quality \(k\)-words for alignment-free sequence comparison ⋮ A measure of DNA sequence similarity by Fourier transform with applications on hierarchical clustering ⋮ Protein Sequence Comparison Method Based on 3-ary Huffman Coding ⋮ Phylogenetic analysis of DNA sequences with a novel characteristic vector ⋮ A novel statistical measure for sequence comparison on the basis of \(k\)-word counts ⋮ New method for comparing DNA primary sequences based on a discrimination measure ⋮ A metric space to study differences between polynucleotides ⋮ Phylogenetic analysis of DNA sequences based on the generalized pseudo-amino acid composition ⋮ Alignment-free comparison of genome sequences by a new numerical characterization ⋮ New powerful statistics for alignment-free sequence comparison under a pattern transfer model ⋮ Comparison of protein secondary structures based on backbone dihedral angles ⋮ Distributional regimes for the number of k -word matches between two random sequences ⋮ Statistical Measures of DNA Sequence Dissimilarity under Markov Chain Models of Base Composition ⋮ A Poisson model of sequence comparison and its application to coronavirus phylogeny
Uses Software
This page was built for publication: A Measure of DNA Sequence Dissimilarity Based on Mahalanobis Distance between Frequencies of Words