Inferring Spatial Phylogenetic Variation Along Nucleotide Sequences

DOI10.1198/016214503000215zbMath1041.62095OpenAlexW2048335804MaRDI QIDQ4468460

Janet S. Sinsheimer, Robert E. Weiss, Marc A. Suchard

Publication date: 10 June 2004

Published in: Journal of the American Statistical Association (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1198/016214503000215

zbMATH Keywords

changepointsphylogenyrecombinationhuman immunodeficiency virusreversible-jump Markov chain Monte Carlo

Mathematics Subject Classification ID

Epidemiology (92D30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Bayesian inference (62F15) Problems related to evolution (92D15) Biochemistry, molecular biology (92C40) Numerical analysis or methods applied to Markov chains (65C40)

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Identifiability of tree-child phylogenetic networks under a probabilistic recombination-mutation model of evolution ⋮ Distribution of distances between topologies and its effect on detection of phylogenetic recombination ⋮ Synonymous and nonsynonymous distances help untangle convergent evolution and recombination ⋮ Counting labeled transitions in continuous-time Markov models of evolution ⋮ Modelling Nonstationary Gene Regulatory Processes ⋮ StepBrothers: inferring partially shared ancestries among recombinant viral sequences ⋮ Segmentation and Estimation for SNP Microarrays: A Bayesian Multiple Change-Point Approach

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