BIOLOGICAL DISTANCES ON DNA KNOTS AND LINKS: Applications to XER recombination

DOI10.1142/S0218216501000846zbMath1011.92023MaRDI QIDQ4541012

Isabel K. Darcy

Publication date: 30 July 2002

Published in: Journal of Knot Theory and Its Ramifications (Search for Journal in Brave)

zbMATH Keywords

DNAtangles4-platsXer recombinase

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40)

Related Items (15)

A 4-string tangle analysis of DNA-protein complexes based on difference topology ⋮ Random state transitions of knots: a first step towards modeling unknotting by type II topoisomerases ⋮ CLASSIFICATION OF TANGLE SOLUTIONS FOR INTEGRASES, A PROTEIN FAMILY THAT CHANGES DNA TOPOLOGY ⋮ Statics and dynamics of DNA knotting ⋮ Rational tangle surgery and Xer recombination on catenanes ⋮ Modeling protein-DNA complexes with tangles ⋮ Knot theory based on the minimal braid in Lorenz system ⋮ Links which are related by a band surgery or crossing change ⋮ Polymers with spatial or topological constraints: theoretical and computational results ⋮ A mathematical model for enzymatic action on DNA knots and links ⋮ SOLVING UNORIENTED TANGLE EQUATIONS INVOLVING 4-PLATS ⋮ Statistical topology of closed curves: Some applications in polymer physics ⋮ Unnamed Item ⋮ Applications of Knot Theory: Using Knot Theory to Unravel Biochemistry Mysteries ⋮ Tangle analysis of difference topology experiments: applications to a Mu protein-DNA complex

Cites Work

• Some metrics on classical knots
• A calculus for rational tangles: applications to DNA recombination
• The determination of the pairs of two-bridge knots or links with Gordian distance one
• Rational tangle distances on knots and links
• TANGLE EQUATIONS

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