Modeling read counts for CNV detection in exome sequencing data

DOI10.2202/1544-6115.1732zbMath1296.92049OpenAlexW2011874456WikidataQ30574430 ScholiaQ30574430MaRDI QIDQ458185

Alena Myšičková, Ruping Sun, Stefan A. Haas, Vera Kalscheuer, Martin Vingron, Michael I. Love

Publication date: 7 October 2014

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc3517018

zbMATH Keywords

HMMhidden Markov modelCNVcopy number variantexome sequencingtargeted sequencing

Mathematics Subject Classification ID

General biostatistics (92B15) Genetics and epigenetics (92D10)

Uses Software

• R
• Bioconductor
• edgeR
• DEseq
• BioHMM
• CNV-seq
• ExomeCNV

Cites Work

• Hidden Markov models approach to the analysis of array CGH data

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