Computational challenges in systems biology

DOI10.1016/j.cosrev.2009.01.002zbMath1302.92042OpenAlexW1975586684MaRDI QIDQ458470

Allison P. Heath, Lydia E. Kavraki

Publication date: 7 October 2014

Published in: Computer Science Review (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.cosrev.2009.01.002

Mathematics Subject Classification ID

Research exposition (monographs, survey articles) pertaining to biology (92-02) Systems biology, networks (92C42)

Related Items (4)

HRSSA - efficient hybrid stochastic simulation for spatially homogeneous biochemical reaction networks ⋮ Convergence properties of posttranslationally modified protein-protein switching networks with fast decay rates ⋮ Joint realizability of monotone Boolean functions ⋮ HSimulator: hybrid stochastic/deterministic simulation of biochemical reaction networks

Uses Software

• MetaCyc
• Cytoscape
• COPASI
• BioModels
• KEGG
• BioGRID
• IntAct
• RegulonDB
• NeMoFinder
• Graemlin
• Dizzy

Cites Work

• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• The algorithmic analysis of hybrid systems
• Modeling of the U1 snRNP assembly pathway in alternative splicing in human cells using Petri nets
• The practitioner's guide to coloured Petri nets.
• Robustness and fragility of Boolean models for genetic regulatory networks
• Statistical mechanics of complex networks
• Introduction to Generalized Stochastic Petri Nets
• Emergence of Scaling in Random Networks
• The Structure and Function of Complex Networks
• The chemical basis of morphogenesis
• Hybrid Systems: Computation and Control
• Exploring complex networks
• Hybrid Systems: Computation and Control
• Computer Aided Verification
• Transactions on Computational Systems Biology III
• Hybrid Systems: Computation and Control

This page was built for publication: Computational challenges in systems biology