Multiscale stochastic reaction-diffusion modeling: application to actin dynamics in filopodia

DOI10.1007/s11538-013-9844-3zbMath1297.92033OpenAlexW1995867870WikidataQ51022227 ScholiaQ51022227MaRDI QIDQ458694

Radek Erban, Garegin A. Papoian, Mark B. Flegg

Publication date: 8 October 2014

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s11538-013-9844-3

Mathematics Subject Classification ID

Diffusion processes and stochastic analysis on manifolds (58J65) Systems biology, networks (92C42)

Related Items (7)

Editorial: Special issue on stochastic modelling of reaction-diffusion processes in biology ⋮ Galerkin finite element method for time-fractional stochastic diffusion equations ⋮ Stochastic Turing patterns: analysis of compartment-based approaches ⋮ Reactive Boundary Conditions as Limits of Interaction Potentials for Brownian and Langevin Dynamics ⋮ Convergence of methods for coupling of microscopic and mesoscopic reaction-diffusion simulations ⋮ Mathematical-Computational Simulation of Cytoskeletal Dynamics ⋮ Multiscale stochastic reaction-diffusion algorithms combining Markov chain models with stochastic partial differential equations

Uses Software

• MCELL
• STEPS
• MesoRD

Cites Work

• An adaptive algorithm for simulation of stochastic reaction-diffusion processes
• Multiscale Reaction-Diffusion Algorithms: PDE-Assisted Brownian Dynamics
• Hybrid computations with flux exchange
• Analysis of Brownian Dynamics Simulations of Reversible Bimolecular Reactions
• Simulation of Stochastic Reaction-Diffusion Processes on Unstructured Meshes

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