A Micro-Macro Framework for Analyzing Steric and Hydrodynamic Interactions in Gliding Assays

DOI10.1137/17M1113503zbMath1395.76116OpenAlexW2775232909MaRDI QIDQ4601613

Christel Hohenegger, Steven Cook, Tamar Shinar

Publication date: 17 January 2018

Published in: Multiscale Modeling & Simulation (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1137/17m1113503

zbMATH Keywords

hydrodynamicsheterogeneous computingcytoskeletonmotor proteinssolid-fluid couplingmultiscale simulationemergent phenomenaactive suspensionssteric interactionsgliding assaymicro-macro methods

Mathematics Subject Classification ID

Finite difference methods applied to problems in fluid mechanics (76M20) Spectral methods applied to problems in fluid mechanics (76M22) Biophysics (92C05) Parallel numerical computation (65Y05) Cell biology (92C37) Physiological flows (76Z05)

Uses Software

• FFTW

Cites Work

• The Dynamics of Microtubule/Motor-Protein Assemblies in Biology and Physics
• Nonequilibrium statistical mechanics of self-propelled hard rods
• The immersed boundary method
• Dimensional Reduction of a Multiscale Continuum Model of Microtubule Gliding Assays
• Instabilities, pattern formation, and mixing in active suspensions
• The stress system in a suspension of force-free particles

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