Analysis and optimization of weighted ensemble sampling

DOI10.1051/m2an/2017046OpenAlexW2521087341MaRDI QIDQ4613907

David Aristoff

Publication date: 25 January 2019

Published in: ESAIM: Mathematical Modelling and Numerical Analysis (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1609.05887

zbMATH Keywords

Markov chainsresamplingmolecular dynamicslong time dynamicsstationary distributionscoarse grainingweighted ensemble

Mathematics Subject Classification ID

Related Items (5)

An ergodic theorem for the weighted ensemble method ⋮ Optimizing Weighted Ensemble Sampling of Steady States ⋮ Optimal potential functions for the interacting particle system method ⋮ Generalizing Parallel Replica Dynamics: Trajectory Fragments, Asynchronous Computing, and PDMPs ⋮ On the Hill relation and the mean reaction time for metastable processes

Cites Work

• Unnamed Item
• Unnamed Item
• Unnamed Item
• Analysis of the accelerated weighted ensemble methodology
• Molecular modeling and simulation. An interdisciplinary guide.
• Genealogical particle analysis of rare events
• Sequential Monte Carlo Methods in Practice
• A Mathematical Framework for Exact Milestoning
• On the Approximation Quality of Markov State Models
• Transition Path Theory for Markov Jump Processes
• Adaptive Multilevel Splitting for Rare Event Analysis
• Particle methods: An introduction with applications
• Trajectory Stratification of Stochastic Dynamics

This page was built for publication: Analysis and optimization of weighted ensemble sampling