The effect of recurrent mutation on the frequency spectrum of a segregating site and the age of an allele

DOI10.1016/j.tpb.2011.04.001zbMath1297.92054OpenAlexW2100801783WikidataQ42840038 ScholiaQ42840038MaRDI QIDQ462440

Yun S. Song, Paul A. Jenkins

Publication date: 20 October 2014

Published in: Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc3143209

zbMATH Keywords

frequency spectrumcoalescentgenealogyallele agetriallelic site

Mathematics Subject Classification ID

Genetics and epigenetics (92D10)

Related Items

Approximate Sampling Formulae for General Finite-Alleles Models of Mutation ⋮ The neutral frequency spectrum of linked sites ⋮ The stationary distribution of a sample from the Wright-Fisher diffusion model with general small mutation rates ⋮ The third moments of the site frequency spectrum ⋮ An empirical approach to demographic inference with genomic data ⋮ An analytical framework in the general coalescent tree setting for analyzing polymorphisms created by two mutations ⋮ An efficient algorithm for generating the internal branches of a Kingman coalescent

Cites Work

• The genealogy, site frequency spectrum and ages of two nested mutant alleles
• Line-of-descent and genealogical processes, and their applications in population genetics models
• Non-equilibrium theory of the allele frequency spectrum
• The coalescent
• The harmonic logarithms and the binomial formula
• On the number of segregating sites in genetical models without recombination
• Simulating probability distributions in the coalescent
• Conditional genealogies and the age of a neutral mutant
• Statistical properties of segregating sites
• The frequency spectrum of a mutation, and its age, in a general diffusion model
• The age of a mutation in a general coalescent tree

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