Efficient finite-difference method for computing sensitivities of biochemical reactions

DOI10.1098/rspa.2018.0303zbMath1407.92009arXiv1707.09193OpenAlexW2740757730WikidataQ94158674 ScholiaQ94158674MaRDI QIDQ4626252

Vo Hong Thanh, Roberto Zunino, Corrado Priami

Publication date: 27 February 2019

Published in: Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1707.09193

zbMATH Keywords

stochastic simulationfinite-difference sensitivity analysisrejection-based simulation

Mathematics Subject Classification ID

Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Computational methods for problems pertaining to biology (92-08)

Related Items (1)

Variance of Finite Difference Methods for Reaction Networks with Non-Lipschitz Rate Functions

Uses Software

• HRSSA

Cites Work

• Efficient stochastic sensitivity analysis of discrete event systems
• Solving the chemical master equation for monomolecular reaction systems analytically
• A process model of Rho GTP-binding proteins
• A critical comparison of rejection-based algorithms for simulation of large biochemical reaction networks
• HRSSA - efficient hybrid stochastic simulation for spatially homogeneous biochemical reaction networks
• The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior
• Stochastic simulation: Algorithms and analysis
• Introduction to Interval Analysis
• An Efficient Finite Difference Method for Parameter Sensitivities of Continuous Time Markov Chains

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