BNP-Seq: Bayesian Nonparametric Differential Expression Analysis of Sequencing Count Data

DOI10.1080/01621459.2017.1328358zbMath1398.62337arXiv1608.03991OpenAlexW2964335858MaRDI QIDQ4690929

Mingyuan Zhou, Xiaoning Qian, Siamak Zamani Dadaneh

Publication date: 23 October 2018

Published in: Journal of the American Statistical Association (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1608.03991

zbMATH Keywords

Markov chain Monte CarloRNA-seqover-dispersionnegative binomial processessymmetric Kullback-Leibler divergence

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Nonparametric estimation (62G05)

Related Items (2)

Compressed spectral screening for large-scale differential correlation analysis with application in selecting glioblastoma gene modules ⋮ Fisher-Pitman Permutation Tests Based on Nonparametric Poisson Mixtures with Application to Single Cell Genomics

Uses Software

• Bioconductor
• edgeR
• DEGseq
• BaySeq
• DEseq
• RUVseq
• HTSeq
• DESeq2

Cites Work

• Bayesian nonparametric Plackett-Luce models for the analysis of preferences for college degree programmes
• Nonparametric Bayes estimators based on beta processes in models for life history data
• Statistical analysis of next generation sequencing data
• A Bayesian analysis of some nonparametric problems
• On Information and Sufficiency
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