Flux modules in metabolic networks

DOI10.1007/s00285-013-0731-1zbMath1337.92078OpenAlexW2094542248WikidataQ45814645 ScholiaQ45814645MaRDI QIDQ471076

Alexander Bockmayr, Arne C. Müller

Publication date: 13 November 2014

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s00285-013-0731-1

zbMATH Keywords

modulesmetabolic networkflux balance analysiselementary flux modes

Mathematics Subject Classification ID

Applications of graph theory (05C90) Biochemistry, molecular biology (92C40) Systems biology, networks (92C42)

Uses Software

• Metatool
• F2c2
• efmtool

Cites Work

• A new constraint-based description of the steady-state flux cone of metabolic networks
• Is maximization of molar yield in metabolic networks favoured by evolution?
• Thermodynamic constraints for biochemical networks
• Monte Carlo sampling and principal component analysis of flux distributions yield topological and modular information on metabolic networks
• A variational principle for computing nonequilibrium fluxes and potentials in genome-scale biochemical networks
• Convex Polytopes

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