Asymptotic distribution of motifs in a stochastic context-free grammar model of RNA folding

DOI10.1007/s00285-013-0750-yzbMath1320.92065arXiv1204.3670OpenAlexW2007474848WikidataQ41856558 ScholiaQ41856558MaRDI QIDQ476824

Christine E. Heitsch, Svetlana Poznanović

Publication date: 2 December 2014

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1204.3670

zbMATH Keywords

central limit theoremstochastic context-free grammarRNA secondary structure

Mathematics Subject Classification ID

Central limit and other weak theorems (60F05) Protein sequences, DNA sequences (92D20) Asymptotic enumeration (05A16)

Related Items (5)

Enumerating secondary structures and structural moieties for circular RNAs ⋮ Asymptotics of bivariate analytic functions with algebraic singularities ⋮ Entropic contribution to phenotype fitness ⋮ RNA secondary structures with given motif specification: combinatorics and algorithms ⋮ Stationary points at infinity for analytic combinatorics

Uses Software

• RNAfold
• RNAsubopt
• NNDB
• Pfold

Cites Work

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• Investigation of the Bernoulli model for RNA secondary structures
• Non-Fourier heat conduction in a finite hollow cylinder with periodic surface heat flux
• Expected distance between terminal nucleotides of RNA secondary structures
• Controlled non-uniform random generation of decomposable structures
• Combinatorics of RNA secondary structures
• Orthogonal polynomials and enumeration problems in molecular biology
• Effect of duct velocity profile and buoyancy-induced flow on efficiency of transient hydrodynamic removal of a contaminant from a cavity
• Singularity Analysis of Generating Functions
• Biological Sequence Analysis
• On context-free languages and push-down automata

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