A PARALLEL ALGORITHM FOR THE CONSTRAINED MULTIPLE SEQUENCE ALIGNMENT PROBLEM DESIGNED FOR GPUs

DOI10.1142/S0129054112500098zbMath1255.92011OpenAlexW2058772587MaRDI QIDQ4902884

Adam Gudyś, Sebastian Deorowicz

Publication date: 18 January 2013

Published in: International Journal of Foundations of Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1142/s0129054112500098

zbMATH Keywords

parallel algorithmsconstrained sequence alignmentGPU general processingprotein comparison

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40)

Uses Software

• CUDA
• Kalign

Cites Work

• Acceleration of the Smith-Waterman algorithm using single and multiple graphics processors
• Algorithms on Strings, Trees and Sequences
• AN ALGORITHM AND APPLICATIONS TO SEQUENCE ALIGNMENT WITH WEIGHTED CONSTRAINTS
• Generalized Polykays, an Extension of Simple Polykays and Bipolykays

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