Identifying CpG Islands: Sliding Window and Hidden Markov Model Approaches

DOI10.1016/B978-0-12-415780-4.00009-0zbMath1302.92035OpenAlexW2490727847MaRDI QIDQ4981699

Robin Davies, Aaron Garrett, James R. Kirkwood, Raina S. Robeva

Publication date: 24 June 2014

Published in: Mathematical Concepts and Methods in Modern Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/b978-0-12-415780-4.00009-0

zbMATH Keywords

hidden Markov modelViterbi algorithmDNA sequenceforward-backward algorithmDNA methylationViterbi decodingBaum-Welch algorithmtraining algorithmsliding window algorithmposterior decoding\(\mathrm{CpG}\) islandsCpG island identificationtumor suppressor promoters

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Uses Software

• CpG Educate

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