The Potential of Family-Free Genome Comparison

DOI10.1007/978-1-4471-5298-9_13zbMath1462.92037OpenAlexW1481103812MaRDI QIDQ4992763

Marília D. V. Braga, Daniel Doerr, Cedric Chauve, Katharina Jahn, Jens Stoye, Annelyse Thévenin, et d'autres.

Publication date: 10 June 2021

Published in: Models and Algorithms for Genome Evolution (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-1-4471-5298-9_13

zbMATH Keywords

adjacency graphancestral genomecommon intervalancestral gene orderorthologous marker

Mathematics Subject Classification ID

Genetics and epigenetics (92D10)

Uses Software

• eggNOG
• OrthoDB
• Mauve
• OrthoMCL
• GASTS
• MSOAR

Cites Work

• Models and algorithms for genome evolution. Selected contributions based on the presentations at the MAGE conference, Montréal, Canada, August 23--26, 2013
• Common intervals of multiple permutations
• Fast algorithms to enumerate all common intervals of two permutations
• Character sets of strings
• The Reversal Median Problem
• Transforming cabbage into turnip
• On the Approximability of Comparing Genomes with Duplicates
• Approximability and Fixed-Parameter Tractability for the Exemplar Genomic Distance Problems
• Algorithms for Finding Gene Clusters
• Combinatorial Pattern Matching
• Research in Computational Molecular Biology
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