Exponential-Family Embedding With Application to Cell Developmental Trajectories for Single-Cell RNA-Seq Data

DOI10.1080/01621459.2021.1886106zbMath1464.62454OpenAlexW3132119066WikidataQ115551735 ScholiaQ115551735MaRDI QIDQ4999115

Jing Lei, Kathryn Roeder, Kevin Lin

Publication date: 6 July 2021

Published in: Journal of the American Statistical Association (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1080/01621459.2021.1886106

zbMATH Keywords

oligodendrocytesmatrix factorizationgene expressionlatent space modelsrandom dot product model

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Numerical methods for low-rank matrix approximation; matrix compression (65F55)

Related Items (1)

Discussion of “Exponential-Family Embedding With Application to Cell Developmental Trajectories for Single-Cell RNA-seq Data”

Uses Software

• PoiClaClu
• softImpute
• t-SNE
• LowRankModels
• Pyglrm
• ZIFA
• UMAP
• zinbwave
• slingshot
• DESeq2

Cites Work

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• Generalized Low Rank Models
• Latent Space Approaches to Social Network Analysis
• Statistical inference on random dot product graphs: a survey
• Principal Curves
• Nonconvex Optimization Meets Low-Rank Matrix Factorization: An Overview
• Low-rank matrix completion using alternating minimization

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