Coupling Particle-Based Reaction-Diffusion Simulations with Reservoirs Mediated by Reaction-Diffusion PDEs

DOI10.1137/20M1352739zbMath1480.92096arXiv2006.00003OpenAlexW3215351586WikidataQ114074179 ScholiaQ114074179MaRDI QIDQ5022756

Mauricio J. Del Razo, Christof Schütte, Margarita Kostré, Frank Noé

Publication date: 19 January 2022

Published in: Multiscale Modeling & Simulation (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/2006.00003

zbMATH Keywords

hybrid numerical methodsmean-field limits of reaction-diffusion processesmultiscale reaction-diffusionopen biochemical systemsparticle-based reaction diffusion

Mathematics Subject Classification ID

Reaction-diffusion equations (35K57) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Biochemistry, molecular biology (92C40) Stochastic particle methods (65C35)

Related Items

Chemical diffusion master equation: Formulations of reaction–diffusion processes on the molecular level, A probabilistic framework for particle-based reaction-diffusion dynamics using classical Fock space representations, Analysis of the chemical diffusion master equation for creation and mutual annihilation reactions

Uses Software

• MCELL
• GitHub
• Smoldyn

Cites Work

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