Ancestral sequence reconstruction for co-evolutionary models

DOI10.1088/1742-5468/ac3d93OpenAlexW3191417864MaRDI QIDQ5032067

Alejandro Lage-Castellanos, Roberto Mulet, E. Rodriguez-Horta

Publication date: 16 February 2022

Published in: Journal of Statistical Mechanics: Theory and Experiment (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/2108.03801

zbMATH Keywords

computational biologyco-evolutionevolutionary processesstatistical inference in biological systems

Mathematics Subject Classification ID

Statistical mechanics, structure of matter (82-XX)

Uses Software

• PAML

Cites Work

• Unnamed Item
• Fast likelihood calculation for multivariate Gaussian phylogenetic models with shifts
• A phylogenetic comparative method for studying multivariate adaptation
• Correctness of Belief Propagation in Gaussian Graphical Models of Arbitrary Topology
• Global multivariate model learning from hierarchically correlated data
• An evolution-based model for designing chorismate mutase enzymes

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