Extending Maximal Perfect Haplotype Blocks to the Realm of Pangenomics

DOI10.1007/978-3-030-42266-0_4zbMath1500.92059OpenAlexW3013860584MaRDI QIDQ5041124

Brendan Mumey, Lucia Williams

Publication date: 13 October 2022

Published in: Algorithms for Computational Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-030-42266-0_4

zbMATH Keywords

haplotype blockpopulation genomicspangenomics

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Computational methods for problems pertaining to biology (92-08)

Uses Software

• MUMmer4

Cites Work

• Efficient Construction of a Compressed de Bruijn Graph for Pan-Genome Analysis
• Algorithms on Strings, Trees and Sequences
• Finding all maximal perfect haplotype blocks in linear time
• A hidden Markov model for investigating recent positive selection through haplotype structure

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