Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss

DOI10.1007/978-3-030-45257-5_8zbMath1500.92056OpenAlexW3128968985MaRDI QIDQ5041802

Sebastien Roch, Erin K. Molloy, Brandon Legried, Tandy J. Warnow

Publication date: 14 October 2022

Published in: Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-030-45257-5_8

zbMATH Keywords

estimationidentifiabilitystatistical consistencyASTRALgene duplication and lossspecies trees

Mathematics Subject Classification ID

Problems related to evolution (92D15) Genetics and epigenetics (92D10)

Related Items (2)

Comparing methods for species tree estimation with gene duplication and loss ⋮ Species tree estimation under joint modeling of coalescence and duplication: sample complexity of quartet methods

Uses Software

• RAxML
• DupTree
• SimPhy
• ASTRAL-II
• PhyloNet
• INDELible
• MulRF
• GitHub
• BUCKy
• ASTRID
• DynaDup

Cites Work

• Unnamed Item
• Reconstructing the shape of a tree from observed dissimilarity data
• Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent
• Comparison of phylogenetic trees
• The coalescent
• The gene evolution model and computing its associated probabilities
• Species Trees from Gene Trees Despite a High Rate of Lateral Genetic Transfer: A Tight Bound (Extended Abstract)
• Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent

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