Representation of $$k$$-mer Sets Using Spectrum-Preserving String Sets

DOI10.1007/978-3-030-45257-5_10zbMath1500.92080OpenAlexW3147478436MaRDI QIDQ5041804

Amatur Rahman, Paul Medvedev

Publication date: 14 October 2022

Published in: Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-030-45257-5_10

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Computational methods for problems pertaining to biology (92-08)

Related Items (1)

Spectrum preserving tilings enable sparse and modular reference indexing

Uses Software

• KMC
• GitHub
• deGSM

Cites Work

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• Fully dynamic de Bruijn graphs
• \textit{De novo} clustering of long-read transcriptome data using a greedy, quality-value based algorithm
• Bidirectional Variable-Order de Bruijn Graphs
• Succinct de Bruijn Graphs
• Bloom Filter Trie – A Data Structure for Pan-Genome Storage

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