Topological Data Analysis of Clostridioides difficile Infection and Fecal Microbiota Transplantation

DOI10.1007/978-3-030-42196-0_18OpenAlexW2741793418MaRDI QIDQ5050426

Stephen Rush, Pavel Petrov, Peter T. Kim, Shaun Pinder, Giseon Heo, Christine H. Lee

Publication date: 15 November 2022

Published in: Emerging Topics in Statistics and Biostatistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1707.08774

zbMATH Keywords

discriminant analysisDNA sequencespersistent homologypersistence landscape\textit{Clostridioides difficile}16S rRNA genefecal microbiota transplantation

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10)

Uses Software

• phom

Cites Work

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• Using persistent homology and dynamical distances to analyze protein binding
• Computing persistent homology
• Topological persistence and simplification
• Probing the geometry of data with diffusion Fréchet functions
• Probability measures on the space of persistence diagrams
• Topological Analysis of Variance and the Maxillary Complex
• Statistical topological data analysis using persistence landscapes

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