Posets and Spaces of $k$-Noncrossing RNA Structures

DOI10.1137/21M1413316zbMath1496.92074arXiv2204.05934OpenAlexW4224921973MaRDI QIDQ5088607

Taoyang Wu, Vincent L. Moulton

Publication date: 13 July 2022

Published in: SIAM Journal on Discrete Mathematics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/2204.05934

zbMATH Keywords

RNA structuresposet topologymultitriangulations\(k\)-noncrossing pseudoknots

Mathematics Subject Classification ID

Applications of graph theory (05C90) Combinatorics of partially ordered sets (06A07) Protein sequences, DNA sequences (92D20)

Cites Work

• Unnamed Item
• RNA sequence, structure, and function: computational and bioinformatic methods
• A new perspective on \(k\)-triangulations
• Classifying RNA pseudoknotted structures
• Growth diagrams, and increasing and decreasing chains in fillings of Ferrers shapes
• Shapes of topological RNA structures
• Multitriangulations as complexes of star polygons
• Canonical homeomorphisms of posets
• Homotopy properties of the poset of nontrivial p-subgroups of a group
• Spaces of RNA secondary structures
• Dynamic programming algorithms for RNA secondary structure prediction with pseudoknots
• On line arrangements in the hyperbolic plane
• A generalization of diagonal flips in a convex polygon
• Combinatorics of RNA structures with pseudoknots
• Generalized triangulations and diagonal-free subsets of stack polyominoes
• Combinatorial Landscapes
• Moduli spaces and macromolecules
• Random k -noncrossing RNA structures
• Combinatorial Computational Biology of RNA
• Rotation Distance, Triangulations, and Hyperbolic Geometry

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