TRACTION: Fast Non-Parametric Improvement of Estimated Gene Trees

DOI10.4230/LIPIcs.WABI.2019.4zbMath1495.92044OpenAlexW2977944785MaRDI QIDQ5091730

Pranjal Vachaspati, Sarah Christensen, Erin K. Molloy, Tandy J. Warnow

Publication date: 27 July 2022

Full work available at URL: https://drops.dagstuhl.de/opus/volltexte/2019/11034/pdf/LIPIcs-WABI-2019-4.pdf/

zbMATH Keywords

incomplete lineage sortinghorizontal gene transfergene tree correction

Mathematics Subject Classification ID

Problems related to evolution (92D15) Genetics and epigenetics (92D10) Computational methods for problems pertaining to biology (92-08)

Uses Software

• RAxML
• Notung
• SimPhy
• DendroPy
• ASTRAL-II
• INDELible
• ASTRID
• ecceTERA
• FastMe
• TreeFix
• OCTAL

Cites Work

• Comparison of phylogenetic trees
• An idealized concept of the true cladistic character
• A mathematical foundation for the analysis of cladistic character compatibility
• Reconciliation With Nonbinary Gene Trees Revisited

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