Synteny Paths for Assembly Graphs Comparison

DOI10.4230/LIPIcs.WABI.2019.24zbMath1495.92040OpenAlexW2978396589MaRDI QIDQ5091750

Evgeny Polevikov, Mikhail Kolmogorov

Publication date: 27 July 2022

Full work available at URL: https://drops.dagstuhl.de/opus/volltexte/2019/11054/pdf/LIPIcs-WABI-2019-24.pdf/

zbMATH Keywords

comparative genomicssynteny blocksgenome assemblyassembly graphs

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Computational methods for problems pertaining to biology (92-08)

Uses Software

• SPAdes
• dipSPAdes
• Sibelia
• Minimap2
• i-ADHoRe
• CYNTENATOR
• PathRacer
• CAMSA
• hybridSPAdes
• GTED
• HINGE
• Canu
• Bandage
• Unicycler
• AGB
• Asgan

Cites Work

• Unnamed Item
• PathRacer: racing profile HMM paths on assembly graph
• An Eulerian path approach to DNA fragment assembly
• Paths, Trees, and Flowers
• GTED: Graph Traversal Edit Distance

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