Seed-driven Learning of Position Probability Matrices from Large Sequence Sets.

DOI10.4230/LIPIcs.WABI.2017.25zbMath1443.92147OpenAlexW2751154915MaRDI QIDQ5111835

Jarkko Toivonen, Esko Ukkonen, Jussi Taipale

Publication date: 27 May 2020

Full work available at URL: https://doi.org/10.4230/LIPIcs.WABI.2017.25

zbMATH Keywords

sequence analysisHamming distanceseedmotif findingtranscription factor binding site

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Software, source code, etc. for problems pertaining to biology (92-04)

Related Items (1)

SeedHam

Uses Software

• TRANSFAC
• DREME
• JASPAR
• GitHub
• DECOD

Cites Work

• On-line construction of suffix trees
• A Space-Economical Suffix Tree Construction Algorithm

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