Optimizing Weighted Ensemble Sampling of Steady States
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Publication:5112040
DOI10.1137/18M1212100MaRDI QIDQ5112040
David Aristoff, Daniel M. Zuckerman
Publication date: 27 May 2020
Published in: Multiscale Modeling & Simulation (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/1806.00860
Markov chainsresamplingsteady statemolecular dynamicssequential Monte Carlocoarse grainingreaction networksweighted ensemble
Probabilistic models, generic numerical methods in probability and statistics (65C20) Monte Carlo methods (65C05) Numerical analysis or methods applied to Markov chains (65C40) Parallel numerical computation (65Y05)
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An ergodic theorem for the weighted ensemble method ⋮ Optimal potential functions for the interacting particle system method ⋮ On the Hill relation and the mean reaction time for metastable processes
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Cites Work
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- Analysis of the accelerated weighted ensemble methodology
- Unbiasedness of some generalized adaptive multilevel splitting algorithms
- Optimisation of interacting particle systems for rare event estimation
- Genealogical particle analysis of rare events
- Sequential Monte Carlo Methods in Practice
- Analysis of adaptive multilevel splitting algorithms in an idealized case
- Rare event computation in deterministic chaotic systems using genealogical particle analysis
- Two Mathematical Tools to Analyze Metastable Stochastic Processes
- Quasi-Stationary Distributions
- On the Approximation Quality of Markov State Models
- Stability of Markovian processes II: continuous-time processes and sampled chains
- Particle methods: An introduction with applications
- Using the QR Factorization and Group Inversion to Compute, Differentiate, and Estimate the Sensitivity of Stationary Probabilities for Markov Chains
- On the Poisson equation in the potential theory of a single kernel.
- Trajectory Stratification of Stochastic Dynamics
- Probability
- Analysis and optimization of weighted ensemble sampling
- Least squares quantization in PCM
- An ergodic theorem for the weighted ensemble method
- First-Passage Phenomena and Their Applications
- Application of the interacting particle system method to piecewise deterministic Markov processes used in reliability
- Sharp Entrywise Perturbation Bounds for Markov Chains
- Partial differential equations and stochastic methods in molecular dynamics
- Regularity Properties of Certain Families of Chance Variables