An online copy number variant detection method for short sequencing reads

DOI10.1080/02664763.2014.1001330OpenAlexW2052782922MaRDI QIDQ5130271

Ayten Yiğiter, Jie Chen, Nazan Danacıoğlu, Lingling An

Publication date: 4 November 2020

Published in: Journal of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1080/02664763.2014.1001330

zbMATH Keywords

breakpointnext generation sequencingchange pointBayesian estimateDNA copy number variationonline change-point detection method

Mathematics Subject Classification ID

Computational methods for problems pertaining to biology (92-08)

Uses Software

• R
• ReadDepth
• CNV-seq

Cites Work

• U-Statistic Based Modified Information Criterion for Change Point Problems
• Bayesian Hidden Markov Modeling of Array CGH Data
• On-Line Inference for Multiple Changepoint Problems
• A Bayesian approach to inference about a change point model with application to DNA copy number experimental data
• Circular binary segmentation for the analysis of array-based DNA copy number data

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