Encoding Threshold Boolean Networks into Reaction Systems for the Analysis of Gene Regulatory Networks

DOI10.3233/FI-2021-2021OpenAlexW3139499457MaRDI QIDQ5164854

Francesca Levi, Roberto Barbuti, Damas Gruska, Roberta Gori, Pasquale Bove, Paolo Milazzo

Publication date: 15 November 2021

Published in: Fundamenta Informaticae (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.3233/fi-2021-2021

Mathematics Subject Classification ID

Computer science (68-XX)

Related Items (2)

Computing preimages and ancestors in reaction systems ⋮ Fixed points and attractors of reactantless and inhibitorless reaction systems

Cites Work

• Unnamed Item
• Unnamed Item
• Investigating dynamic causalities in reaction systems
• An analysis for causal properties of membrane interactions
• Ancestors, descendants, and gardens of Eden in reaction systems
• Abstract interpretation based verification of temporal properties for BioAmbients
• Criticality in random threshold networks: annealed approximation and beyond
• Predictors for flat membrane systems
• Generalized contexts for reaction systems: definition and study of dynamic causalities
• Multiset patterns and their application to dynamic causalities in membrane systems
• Causal static analysis for brane calculi
• A static analysis for brane calculi providing global occurrence counting information
• A TOUR OF REACTION SYSTEMS
• Specialized Predictor for Reaction Systems with Context Properties
• Studying Opacity of Reaction Systems through Formula Based Predictors*
• Causality in Membrane Systems
• Computing preimages and ancestors in reaction systems

This page was built for publication: Encoding Threshold Boolean Networks into Reaction Systems for the Analysis of Gene Regulatory Networks