Circular helix-like curve: an effective tool of biological sequence analysis and comparison

DOI10.1155/2016/3262813zbMath1358.92072OpenAlexW2440775856WikidataQ37044043 ScholiaQ37044043MaRDI QIDQ519603

Wenli Xiao, Yu-Shuang Li

Publication date: 5 April 2017

Published in: Computational \& Mathematical Methods in Medicine (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1155/2016/3262813

zbMATH Keywords

DNA sequencecircular helix-like curvephylogenetic relationships

Mathematics Subject Classification ID

Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20) Genetics and epigenetics (92D10)

Cites Work

• Phylogenetic analysis of DNA sequences with a novel characteristic vector
• A complexity-based measure and its application to phylogenetic analysis
• TN curve: a novel 3D graphical representation of DNA sequence based on trinucleotides and its applications
• A novel representation of DNA sequence based on CMI coding
• Alignment-free comparison of genome sequences by a new numerical characterization
• C-curve: a novel 3D graphical representation of DNA sequence based on codons
• New 3D graphical representation of DNA sequence based on dual nucleotides
• Three 3D graphical representations of DNA primary sequences based on the classifications of DNA bases and their applications
• Linear regression model of short \(k\)-word: a similarity distance suitable for biological sequences with various lengths
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