Representations of Partial Leaf Sets in Phylogenetic Tree Space

DOI10.1137/18M1235855zbMath1432.92064OpenAlexW2995902320WikidataQ126581697 ScholiaQ126581697MaRDI QIDQ5208889

Gillian Roxanne Grindstaff, Megan Owen

Publication date: 22 January 2020

Published in: SIAM Journal on Applied Algebra and Geometry (Search for Journal in Brave)

Full work available at URL: https://epubs.siam.org/doi/pdf/10.1137/18M1235855

zbMATH Keywords

dimensionality reductionsupertreephylogenetic treesphylogenetic reconstructiontree space

Mathematics Subject Classification ID

Trees (05C05) Problems related to evolution (92D15) Combinatorial complexity of geometric structures (52C45)

Related Items (3)

The ultrametric Gromov-Wasserstein distance ⋮ Stratifying the space of barcodes using Coxeter complexes ⋮ On the approximability of the fixed-tree balanced minimum evolution problem

Uses Software

• BEAST
• Phylo-MCOA
• kdetrees
• ASTRAL-II
• PhyloNet

Cites Work

• Geometry of the space of phylogenetic trees
• Phylogenetic supertrees. Combining information to reveal the tree of life
• Polyhedral computational geometry for averaging metric phylogenetic trees
• Computing Medians and Means in Hadamard Spaces
• Computing Geodesic Distances in Tree Space
• A New Algorithm for Generating All the Maximal Independent Sets
• Confidence Sets for Phylogenetic Trees

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