Extended pairwise local alignment of wild card DNA/RNA sequences using dynamic programming

DOI10.1080/00949655.2014.928294zbMath1457.62343OpenAlexW2001229561MaRDI QIDQ5220696

Axel Fürstberger, Hans A. Kestler, Markus Maucher

Publication date: 27 March 2020

Published in: Journal of Statistical Computation and Simulation (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1080/00949655.2014.928294

zbMATH Keywords

dynamic programmingprotein sequencesnucleotide sequenceslocal alignmentDNA/RNA sequencesbest-/worst-case analysiswild bases alignment

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Learning and adaptive systems in artificial intelligence (68T05) Protein sequences, DNA sequences (92D20) Software, source code, etc. for problems pertaining to biology (92-04)

Related Items (1)

Proceedings of Reisensburg 2013

Uses Software

• T-coffee
• FASTA3
• ESyPred3D
• GitHub
• Amazon EC2
• G-BLASTN

Cites Work

• Unnamed Item

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