Markov Model Theory

DOI10.1007/978-94-007-7606-7_3zbMath1334.60153OpenAlexW1518689168WikidataQ38168111 ScholiaQ38168111MaRDI QIDQ5264045

Christof Schütte, Marco Sarich, Jan-Hendrik Prinz

Publication date: 20 July 2015

Published in: Advances in Experimental Medicine and Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-94-007-7606-7_3

zbMATH Keywords

Markov modelsmolecular systems

Mathematics Subject Classification ID

Continuous-time Markov processes on general state spaces (60J25) Markov chains (discrete-time Markov processes on discrete state spaces) (60J10) Biochemistry, molecular biology (92C40)

Cites Work

• A direct approach to conformational dynamics based on hybrid Monte Carlo
• Phase transitions and metastability in Markovian and molecular systems
• Identification of almost invariant aggregates in reversible nearly uncoupled Markov chains
• Robust Perron cluster analysis in conformation dynamics
• Approximating selected non-dominant timescales by Markov state models
• Estimating the Eigenvalue Error of Markov State Models
• Tunnel effect and symmetries for Kramers–Fokker–Planck type operators
• On the Approximation Quality of Markov State Models
• Transition Path Theory for Markov Jump Processes
• Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations
• Long‐Time Protein Folding Dynamics from Short‐Time Molecular Dynamics Simulations
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