Constrained Community-Based Gene Regulatory Network Inference

DOI10.1145/2688909zbMath1369.92039OpenAlexW2075823265MaRDI QIDQ5270735

Ferdinando Fioretto, Enrico Pontelli, Agostino Dovier

Publication date: 30 June 2017

Published in: ACM Transactions on Modeling and Computer Simulation (Search for Journal in Brave)

Full work available at URL: http://hdl.handle.net/11390/1069108

zbMATH Keywords

gene regulatory networksbioinformaticsconstraint programming

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10) Systems biology, networks (92C42)

Related Items (1)

Accelerating exact and approximate inference for (distributed) discrete optimization with GPUs

Uses Software

• ElemStatLearn
• ARACNE
• GeneNetWeaver
• RegulonDB
• DREAM4

Cites Work

• Modeling biological systems in stochastic concurrent constraint programming
• Least angle regression. (With discussion)
• Identifying Necessary Reactions in Metabolic Pathways by Minimal Model Generation
• Detecting Inconsistencies in Large Biological Networks with Answer Set Programming
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