Particle-Based Multiscale Modeling of Calcium Puff Dynamics

DOI10.1137/15M1015030zbMath1352.65022arXiv1504.00146OpenAlexW2276441017MaRDI QIDQ5298149

Radek Erban, U. Dobramysl, Sten Rüdiger

Publication date: 13 December 2016

Published in: Multiscale Modeling & Simulation (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1504.00146

zbMATH Keywords

intracellular calciummultiscale modelingstochastic diffusioncalcium puffs

Mathematics Subject Classification ID

Stochastic particle methods (65C35) Systems biology, networks (92C42)

Related Items (4)

Multilevel and multi-index Monte Carlo methods for the McKean-Vlasov equation ⋮ Reactive Boundary Conditions as Limits of Interaction Potentials for Brownian and Langevin Dynamics ⋮ Coarse-graining molecular dynamics: stochastic models with non-Gaussian force distributions ⋮ Multiscale stochastic reaction-diffusion algorithms combining Markov chain models with stochastic partial differential equations

Uses Software

• MesoRD
• Tyche
• Smoldyn

Cites Work

• Unnamed Item
• \(\mathrm{Ca}^{2+}\)-activation kinetics modulate successive puff/spark amplitude, duration and inter-event-interval correlations in a Langevin model of stochastic \(\mathrm{Ca}^{2+}\) release
• Convergence of methods for coupling of microscopic and mesoscopic reaction-diffusion simulations
• Mathematical physiology. I: Cellular physiology
• Asymptotic Analysis of Buffered Calcium Diffusion near a Point Source
• Analysis of the Two-Regime Method on Square Meshes
• Analysis of Brownian Dynamics Simulations of Reversible Bimolecular Reactions
• Reduction of calcium release site models via fast/slow analysis and iterative aggregation/disaggregation
• From molecular dynamics to Brownian dynamics

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