A new method to cluster DNA sequences using Fourier power spectrum

DOI10.1016/j.jtbi.2015.02.026zbMath1342.92138OpenAlexW2141476155WikidataQ42156635 ScholiaQ42156635MaRDI QIDQ530507

Chenglong Yu, Changchuan Yin, Rong Lucy He, Tung Hoang, Hui Zheng, Stephen Shing-Toung Yau

Publication date: 1 August 2016

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc7094126

zbMATH Keywords

momentsphylogenetic treesgenes

Mathematics Subject Classification ID

Problems related to evolution (92D15) Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)

Related Items (6)

An estimator for local analysis of genome based on the minimal absent word ⋮ Weighted measures based on maximizing deviation for alignment-free sequence comparison ⋮ Phylogenetic analysis of DNA sequences based on fractional Fourier transform ⋮ Comparisons of classification methods for viral genomes and protein families using alignment-free vectorization ⋮ Periodic power spectrum with applications in detection of latent periodicities in DNA sequences ⋮ Discrete wavelet packet transform based discriminant analysis for whole genome sequences

Uses Software

• Clustal X
• MEGA6

Cites Work

• Unnamed Item
• Fractional dynamics in DNA
• A novel clustering method via nucleotide-based Fourier power spectrum analysis
• Prediction of protein coding regions by the 3-base periodicity analysis of a DNA sequence
• The role of signal processing concepts in genomics and proteomics

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