Occurrence of structured motifs in random sequences: arbitrary number of boxes

DOI10.1016/j.dam.2010.12.023zbMath1227.05026OpenAlexW2055080438MaRDI QIDQ534349

Valeri T. Stefanov, Sophie Schbath, Stephane Robin

Publication date: 17 May 2011

Published in: Discrete Applied Mathematics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.dam.2010.12.023

zbMATH Keywords

probability generating functionpatternsemi-Markov processDNA sequencestructured motif

Mathematics Subject Classification ID

Discrete-time Markov processes on general state spaces (60J05) Permutations, words, matrices (05A05) Markov renewal processes, semi-Markov processes (60K15)

Cites Work

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• A note on occurrence of gapped patterns in i.i.d. Sequences
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• On some waiting time problems
• The intersite distances between pattern occurrences in strings generated by general discrete- and continuous-time models: an algorithmic approach
• Pattern Markov Chains: Optimal Markov Chain Embedding Through Deterministic Finite Automata

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